Jit
Enthusiast computational biologist with business dream !!!
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RNA-seq Analysis Workshop Course Materials
By Jit 2369 days agochagall.med.cornell.edu - RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves...Project Associate Bioinformatics @ IIT Mandi
Eligibility : MSc(Bio-Informatics, Bio-Tech), BSc, BE/B.Tech(Bio-Medical /Bio-Technology Engg, CSE) Location : Kulu Job Category : Govt Jobs, Research Last Date : 20 May 2015 Job Type : Full Time Hiring Process : Walk - In IIT Mandi...AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2334 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...Project Associate Bioinformatics @ Central Food Technological Research Institute (CFTRI)
Central Food Technological Research Institute (CFTRI) Project Assistant (Level-II) job position in Central Food Technological Research Institute (CFTRI) on a temporary contractual basis in the research project (GAP 0469) funded by Science &...Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
By Shruti Paniwala 2255 days agowww.well.ox.ac.uk - Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect...NRCO Vacancies For Junior Research Fellow – Pakyong, Sikkim
Junior Research Fellow Pay Scale:Rs 25,000/- Educational Requirements:MSc (with NET qualification) / M.Tech degree (with or without NET) with minimum 55% marks in Biotechnology/ Bioinformatics/ Molecular Biology or any other related field. Other...snakepipes: A toolkit based on snakemake and python for analysis of NGS data
By Jit 2038 days agogithub.com - snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C Whole Genome Bisulfite Seq/WGBS (*Also available in...gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
By Rahul Nayak 1799 days agogithub.com - gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and...Assistant Professor, Central University of Himachal Pradesh, India
Central University of Himachal Pradesh PO Box: 21 DHARAMSHALA, DISTRICT KANGRA, HIMACHAL PRADESH – 176215 EMPLOYMENT NOTICE NO.: 02 / 2015 APPOINTMENT TO VARIOUS TEACHING, NON-TEACHING AND OTHER ACADEMIC STAFF POSITIONS Applications...Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome...
By Jit 1673 days agogithub.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...
