Jit
Enthusiast computational biologist with business dream !!!
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Important Journals, Blogs and Forums for Bioinformaticians
By Jit 3528 days ago Comments (41)Journals, Blogs and Forums for BioinformaticiansJRF Bioinformatics job vacancies in Tezpur University
Memo No. DoRD/CSE/SSS/20-295/112-A Date: 01/02/2017 Project Title : “Integrating genome scale metabolic analysis of model plant pathogen Ralstonia solanacearum with RNAseq and fluxomics” Essential qualification : M.Tech. in CSE/IT (With...BRIG
By Jit 3520 days agobrig.sourceforge.net - BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available...bedtools
By Jit 3512 days agobedtools.readthedocs.io - Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For...Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High...
By Jit 2734 days agogithub.com - Darwin-WGA, is the first hardware accelerator for whole genome alignment and accelerates the gapped filtering stage. Darwin-WGA also employs GACT-X, a novel algorithm used in the extension stage to align arbitrarily long genome sequences using a...PBSuite: Software for Long-Read Sequencing Data from PacBio
By Jit 3509 days agosourceforge.net - PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly -----Read The...MyCC: Accurate binning of metagenomic contigs via automated clustering sequences using information...
By Jit 3505 days agosourceforge.net - MyCC, an automated binning tool that combines genomic signatures, marker genes and optional contig coverages within one or multiple samples, in order to visualize the metagenomes and to identify the reconstructed genomic fragments. More...STELLAR: fast and exact local alignments
By Neel 2961 days agowww.seqan.de - STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X...Prokka: tool for the rapid annotation of prokaryotic genomes
By Jit 3502 days agowww.vicbioinformatics.com - Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files...Syri compares alignments between two chromosome-level assemblies and identifies synteny and...
By Shruti Paniwala 1589 days agogithub.com - Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.
