BOL

github.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...

While your PhD or PostDoc application, it is more common that you got rejected by many professors. Don't disappoint reply it calmly.

csb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...

github.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...

Research Associate, Project Fellow (Biological Sciences) Institute of Genomics & Integrative Biology (IGIB) - New Delhi, Delhi Pay Scale: Rs. 22,000/- + 30 % HRA per month Educational Requirements: PhD in any branch of Biological Sciences...

GATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...

Applications are invited from individuals who have high motivation to do research for the DBT sponsored project o n “Establishment of National Repository for Microalgae & Cyanobacteria” funded by Department of Biotechnology, Govt. of India under...

github.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...

Junior Research Fellow (JRF) / Postdoc positions in Cell and Structural biology at ICGEB, New Delhi with Amit Sharma Research positions are open starting 15th August 2015. Projects are specifically for protein structure analysis. Projects also...

github.com - jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants...