Poonam Mahapatra
Bioinformatics Researcher
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LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 2426 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Marikunnu P.O., Kozhikode – 673 012, Kerala WALK -IN- TEST CUM INTERVIEW Walk- in- Test cum Interview (based on test) for the selection of Research Associate...FiNGS: Filters for Next Generation Sequencing
By Neel 2051 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...
Libraries or management tools for high throughput sequencing data
Last updated 736 days ago by LEGEGATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...Senior Research Fellow @ Indian Agricultural Statistics Research Institute
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Institute of Cytology & Preventive Oncology (ICPO) which was initially established as Cytology Research Centre ( CRC ) by the Indian Council of Medical Research (ICMR) in 1979, came into the existence in 1989 when CRC was elevated to the level...Qualimap2: Evaluating next generation sequencing alignment data
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Peng Lab at Janelia Farm Research Campus, Howard Hughes Medical Institute focuses on data mining for bioinformatics and computational molecular biology, particularly, bioimage data mining and informatics. These bioimages include cellular and...Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
By BioStar 2889 days agogithub.com - Tool for detecting and cleaning PacBio / Nanopore long reads after whole genome amplification. Check the poster from the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the source...
