Jit
Enthusiast computational biologist with business dream !!!
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R 3.2.0 is released
By Neel 3508 days agoR 3.2.0 (codename “Full of Ingredients”) was released yesterday.nanofilt: Filtering and trimming of long read sequencing data
By Jit 2309 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...JRF Bioinformatics at National Institute of High Security Animal Diseases (ICAR)
F.No. 4-59/2013-NIHSAD Dated: 21st April, 2015 SRF/ JRF job vacancies in National Institute of High Security Animal Diseases (ICAR) Name of Post : JRF No. of Post : 01 Qualification : M.V.Sc or M.Tech./M.Sc. (preferably with NET...BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2228 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...JRF Bioinformatics @ Pune University
Pune University is inviting applications from indian citizens for recruiting following posts: Vacancies: Junior Research Fellow-04 Age Limits: Candidates age should be not more than 28 years. Qualification: Candidates should possess M.Sc in...snakepipes: A toolkit based on snakemake and python for analysis of NGS data
By Jit 2005 days agogithub.com - snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C Whole Genome Bisulfite Seq/WGBS (*Also available in...Affy has acquired Eureka Genomics for 15M $
By Martin Jones 3476 days agoAffymetrix Acquires Assets Of Eureka Genomics CorporationgapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
By Rahul Nayak 1766 days agogithub.com - gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and...Alessandra Carbone Lab
Our group works on various problems connected with the functioning and evolution of biological systems. We use mathematical tools, coming from statistics and combinatorics, algorithmic tools and molecular physics tools to study basic principles of...Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome...
By Jit 1640 days agogithub.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...
