Jit
Enthusiast computational biologist with business dream !!!
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nanofilt: Filtering and trimming of long read sequencing data
By Jit 2990 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...JRF in Bioinformatics @ Central University of Rajasthan
Central University of Rajasthan Department of Biotechnology School of Life Sciences Bandarsindri, Distt. Ajmer Applications are invited for one JRF position supported by DST sponsored project in Bioinformatics with Dr. Tarun Kumar...BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2910 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...Bioinformatics Training Fellowship !!
Applications are invited from suitable candidates for six months ‘Training Fellowship’ in Bioinformatics under the BTISNET program of DBT in the Distributed Information Sub center (DISC) facility at NIPGR, New Delhi, under the supervision of Dr....nQuire: A statistical framework for ploidy estimation using NGS short-read data
By Jit 2806 days agogithub.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
By Neel 2455 days agogithub.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...RA Bioinformatics at University of Delhi
BIOINFORMATICS INFRASTRUCTURE FACILITY GARGI COLLEGE (University of Delhi) SiriFort Road, New Delhi-110049 Walk- in- interview Bioinformatics Infrastructure Facility (BIF), Gargi College, University of Delhi invites to appear for interview...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 2423 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...National Research Centre on Plant Biotechnology for RA/JRF positions
National Research Centre on Plant Biotechnology - New Delhi, Delhi National Research Centre on Plant Biotechnology recruitments job vacancies for RA/JRF positions Name of post: Research Associate Salary: Rs.36000/-+ 30% HRA* Educational...FiNGS: Filters for Next Generation Sequencing
By Neel 2048 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...
