Jit
Enthusiast computational biologist with business dream !!!
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HALC: High throughput algorithm for long read error correction
By Jit 3047 days ago Comments (1)github.com - HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so that a long read region can be aligned to at least one contig...Teaching Assistant at SVIMS
Eligible candidates are invited for a walk-in-interview for recruitment of Teaching Assistant in the Department of Bioinformatics on 8.08.2015 at 10 A.M. in the Committee Hall, SVIMS, Tirupati. The candidates have to attend with all original...nanofilt: Filtering and trimming of long read sequencing data
By Jit 2995 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...
BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2915 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...BINC examination 2015 !!!
By Jitendra Narayan 4304 days ago Comments (1)Registration for BINC examination 2015 will open soon.nQuire: A statistical framework for ploidy estimation using NGS short-read data
By Jit 2811 days agogithub.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...JRF in Bioinformatics @ NEHU
Department of Botany & Bioinformatics Centre NORTH-EASTERN HILL UNIVERSITY, SHILLONG 793022 Applications with complete bio-data from candidates possessing the required qualifications are invited for the posts of JRF (2) and Project Assistant...gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
By Rahul Nayak 2453 days agogithub.com - gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and...20th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME)
20th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME) 9 - 14 August 2015 St. Augustine, Trinidad and Tobago Organiser: Christine Carrington (University of the West Indies - UWI, St. Augustine, Trinidad...
