Jit
Enthusiast computational biologist with business dream !!!
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Hercules: a profile HMM-based hybrid error correction algorithm for long reads
By Jit 2970 days agogithub.com - Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several studies require long and accurate reads including de novo assembly, fusion and structural variation detection....JRF/SRF at University of Calcutta
Applications are invited to appear at a walk-in-interview for one post of Junior Research Fellow in the DBT(DBT Twinning NER) sponsored project entitled “Protein folding kinetics is a selection force on shaping codon usage bias in the high...LoRMA: A tool for correcting sequencing errors in long reads
By Abhimanyu Singh 2952 days agogite.lirmm.fr - An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected reads are...JRF in Bioinformatics @ Pondicherry University
Eager to get JRF job in Puducherry? Pondicherry University, School of Life Sciences, Centre for Bioinformatics has issued notification to fill the vacancy of JRF for DST sponsored research project entitled "Design and discovery of aurora kinase...Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
By Rahul Nayak 2910 days agosourceforge.net - Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like...PhD opportunity / AiCADD fellowship (MHRD, Govt. of India) of University of Kerala.
No. DCB/DBT-BIF/229 /14-15 07-11-2014 Applications are invited for the AiCADD fellowship (MHRD, Govt. of India) of University of Kerala. The terms and...Genome assembly tutorial "Genome Assembly for short and long reads"
By Jit 2817 days ago Comments (1)bioinformaticsdotca.github.io - In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to building contigs and analysis of the results. At the end of the lab you will...SViper: Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact...
By Neel 2481 days agogithub.com - Call sviper ~$ ./sviper -s short-reads.bam -l long-reads.bam -r ref.fa -c variants.vcf -o polished_variants This will output a polished_variants.vcf file, that contains all the refined variants. Sometimes it is helpful to look at the...Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
By BioStar 2436 days agogithub.com - Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run...SAU Bioinformatics/Plant Biotech JRF Vacancy
Applications are invited for the post of Junior Research Fellow (JRF) to work on SERB, DST funded project entitled “Genome wide analysis of ascorbate oxidase multi-gene family and elucidating its role in negative regulation of stress response in...
