Jit
Enthusiast computational biologist with business dream !!!
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Cerulean: A hybrid assembly using high throughput short and long reads
By Rahul Nayak 3043 days agosourceforge.net - Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in...JRF Bioinformatics at CUK
JRF job opportunity in Central University of Kerala (CUK) on temporary basis Project Title : "Targeting TAL effector mediated susceptibility for durable and broad-spectrum resistance to bacterial blight in Rice" No. of Post :...Hercules: a profile HMM-based hybrid error correction algorithm for long reads
By Jit 2967 days agogithub.com - Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several studies require long and accurate reads including de novo assembly, fusion and structural variation detection....Assistant Professor - Computational Biology and Bioinformatics in Navi Mumbai
No. ACTREC / ADVT-A/2/2015 Pay in Pay band and Grade Pay : PB-3 (Rs 15,600-39,100) Pay in pay band Rs 21,900+ G.P. of Rs 7,600 Total emoluments = 82,000/- p.m. & nbsp Educational Qualification : Ph.D. or MD/Ph.D. Experience : Post MD /...Rebaler: program for conducting reference-based assemblies using long reads.
By Jit 2938 days agogithub.com - Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...ArrayGen Next Generation Genome Browser Coming Soon !!!
By ArrayGen Technologies 3958 days agoArrayGen Technologies - www.arraygen.comDeepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Neel 2868 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful...SRF/JRF Bioinformatics at CIARI
Realizing the importance of Island Agriculture to meet the requirements of local population and tourists, Indian Council of Agricultural research (ICAR) established Central Island Agricultural Research Institute, Port Blair on June 23rd, 1978 by...NextDenovo: string graph-based de novo assembler for TGS long reads
By Jit 2464 days agogithub.com - NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate...Post-doc position at LABGeM - Evry, France
The LABGeM team (CEA/Genoscope, CNRS UMR 8030, France, Dir. Claudine Médigue) is developing integrated approaches which combines bioinformatics methods based (i) on genomic and metabolic contexts, (ii) on an orignal metabolic network representation...
