Jit
Enthusiast computational biologist with business dream !!!
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GMASS: a novel measure for genomeassembly structural similarity
By Abhimanyu Singh 2671 days agobioinfo.konkuk.ac.kr - The GMASS score is a novel measure for representing structural similarity between two assemblies. It will contribute to the understanding of assembly output and developing de novo...Fastq format
By Jit 3382 days agoen.wikipedia.org - FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a...RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes
By Rahul Nayak 2288 days agogithub.com - RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel...MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
By Neel 1709 days agogithub.com - MitoZ, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly together with annotation and visualization results from HTS raw...SciLifeLab tutorial for bioinformatics analysis !
By Jit 3033 days agoscilifelab.github.io - SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-2014) Metagenomics Workshop 2015 November - Uppsala2016 November - Uppsala2017 November - Uppsala Introduction...quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat...
By Abhi 789 days agowww.atcgn.com - quarTeT is a collection of tools for T2T genome assembly and basic analysis in automatic workflow.Task include: AssemblyMapper : reference-guided genome assembly GapFiller : long-reads based gap filling TeloExplorer : telomere...
Bioinformatics Training Courses At RASA LSI
Last updated 2465 days ago by RASA Life SciencesRASA conducts comprehensive Life Science skill development training courses in Pune, India for working professionals, researchers, students and job-seeker. The trainings are crafted meticulously, covering different modules of courses such as...QUAST: quality assessment tool for genome assemblies
By Jitendra Prajapati 3774 days ago Comments (2)bioinformatics.oxfordjournals.org - QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assemblies, thus is suitable for comparison. More...Meraculous: De Novo Genome Assembly with Short Paired-End Reads
By Jit 3194 days agowww.ncbi.nlm.nih.gov - We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of the haploid yeast Pichia...
