Jit
Enthusiast computational biologist with business dream !!!
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Walk-ins for JRF ans SRF post in NIRRH, Mumbai
Title of project- "EXPLORING THE HINGE AND TRANSMEMBRANE REGION OF HUMAN FSHR FOR DESIGN OF SMALL MOLECULE AND PEPTIDOMIMETIC MODULATORS" Name of the Post- Junior Research Fellow No. of vacancy- One Stipend- Rs. 25000/ +30% HRA Essential...nanofilt: Filtering and trimming of long read sequencing data
By Jit 2309 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...JRF Bioinformatics @ Pune University
Pune University is inviting applications from indian citizens for recruiting following posts: Vacancies: Junior Research Fellow-04 Age Limits: Candidates age should be not more than 28 years. Qualification: Candidates should possess M.Sc in...BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2228 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...Affy has acquired Eureka Genomics for 15M $
By Martin Jones 3476 days agoAffymetrix Acquires Assets Of Eureka Genomics CorporationnQuire: A statistical framework for ploidy estimation using NGS short-read data
By Jit 2124 days agogithub.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...Alessandra Carbone Lab
Our group works on various problems connected with the functioning and evolution of biological systems. We use mathematical tools, coming from statistics and combinatorics, algorithmic tools and molecular physics tools to study basic principles of...ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
By Neel 1773 days agogithub.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...X. Shirley Liu Lab
The research in our laboratories are focused on the following three areas: Bioinformatics Cancer Epigenetics More at http://liulab.dfci.harvard.edu/LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1741 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...
