github.com - HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using...
Research Associate/JRF/SRF position, DBT Sponsored Bioinformatics Infrastructure Facility
Applicants should hold a PhD or a first class MSc/MTech degree in Bioinformatics of Biotechnology/Life Sciences; experience in using bioinformatics tools,...
Lab focus on understanding how organisms adapt to their environments. They combine omics approaches with detailed molecular and phenotypic analyses to get a comprehensive picture of adaptation. Our aim at being internationally recognized as a...
www.ncbi.nlm.nih.gov - Install and use the NCBI Datasets command line tools
The NCBI Datasets datasets command line tools are datasets and dataformat .
Use datasets to download biological sequence data across all domains of life from...
Biomedical Informatics Centre, PGIMER, Chandigarh invites application for a project dissertation program for students who have completed their first year of M.Sc. in Bioinformatics.
This is an exciting opportunity for Master's students to train...
www.weizmann.ac.il - Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs...
dbikard.github.io - https://dbikard.github.io/genomenotebook/
Install
pip install genomenotebook
How to use
Create a simple genome browser with a search bar. The sequence appears when zooming in.
import genomenotebook as gn
g=gn.GenomeBrowser(genome_path,...
Mitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the mitochondrial genome (mitogenome) from sequencing data, typically obtained through techniques like next-generation sequencing (NGS)....