Jit
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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
By Rahul Nayak 2333 days agogithub.com - gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and...Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome...
By Jit 2207 days agogithub.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...MetaPred2CS
By Manisha Mishra 3390 days agogithub.com - MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction prediction methods to predict prokaryotic two-component...Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB
Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application....Bioinformatics Faculty at BHARATHIDASAN UNIVERSITY
BHARATHIDASAN UNIVERSITY (Reaccredited by NAAC with ‘A’ grade) TIRUCHIRAPPALLI - 620 024 I N V I T E S APPLICATIONS FOR FACULTY POSITIONS UNDER UGC XII PLAN CREATED POSTS ON CONTRACTUAL BASIS TILL 31.03.2017 IN THE FOLLOWING UNIVERSITY...The "Ifs" and "Buts" of NGS Quality Control and Trimming
By BioStar 527 days agoNGS quality control and trimming are essential steps to ensure reliable and accurate data for analysis. While the "ifs" highlight the clear benefits of these steps, the "buts" remind us of the potential pitfalls. By adopting best practices and...R.A Bioinformatics at JNU, Delhi
R.A Jobs opportunity in Jawaharlal Nehru University (JNU) on purely temporary basis Project Title : "Structural and functional characterization of serine biosynthetic pathway enzymes from Entamoeba histolytica" No. of Post :...VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
By Rahul Nayak 2810 days agogithub.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...Research Trainees recruitment in National Agri-Food Biotechnology Institute (NABI)
Research Trainees recruitment in National Agri-Food Biotechnology Institute (NABI) Eligibility : Pursuing final year of M.Sc./M.Tech. Subject category for training : I. Agricultural biotechnology II. Computational biology and bioinformatics...jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
By Abhimanyu Singh 2515 days agogithub.com - jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants...
