Abhimanyu Singh
A bioinformatics beginner
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Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Jit 2867 days agogithub.com - Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After...RA Bioinformatics at IISER
Advertisement: Research Position in Computational Biology in the group of Shree P. Pandey Positions available in the area of NGS data analysis, bioinformatics, plant genomics Project Description: Projects involves high throughput analysis of data...Cerulean: A hybrid assembly using high throughput short and long reads
By Rahul Nayak 2835 days agosourceforge.net - Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in...RA Bioinformatics at North Eastern Hill University
Bioinformatics Infrastructure Facility, Department of RDAP, NEHU vacancy of Research Associate Name of the Post: Research Associate No. of the Post: 01 One Age Limit: Max. 35 years Salary: Rs. 22000/- per month plus HRA Required Job...Hercules: a profile HMM-based hybrid error correction algorithm for long reads
By Jit 2759 days agogithub.com - Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several studies require long and accurate reads including de novo assembly, fusion and structural variation detection....Pacman
By Rahul Nayak 4040 days agoThe pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions.Rebaler: program for conducting reference-based assemblies using long reads.
By Jit 2730 days agogithub.com - Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...RA WALK-IN-INTERVIEW @ NBFGR, Lucknow
F.No. 1(122)/2015-Admn. (CABin Project) Research Associate/Young Professional/SRF Zoology job vacancies in National Bureau of Fish Genetic Resources (NBFGR) Post Name: Research Associate (Computer Science/ Applications)...Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Neel 2660 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful...
A guide for complete R beginners :- Getting data into R
Last updated 4031 days ago by Archana MalhotraFor a beginner this can be is the hardest part, it is also the most important to get right. It is possible to create a vector by typing data directly into R using the combine function ‘c’ x same as x creates the vector x...
