Efflux pumps (RND family)
Functioning of efflux systems in Gram-negative bacteria
Determinants of the compound-efflux system interactions
Action of inhibitors on efflux systems
Structural and dynamical features of the efflux...
github.com - ASCIIGenome is a genome browser based on command line interface and designed for running from console terminals.
Since ASCIIGenome does not require a graphical interface it is particularly useful for quickly visualizing genomic data...
Broad area of research:
Genome Annotation and Functional Genomics
Bergman Lab is actively engaged in the development and application of computational methods to improve the annotation of functional biological features in genome sequences....
genoplotr.r-forge.r-project.org - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
Features
Linear...
sourceforge.net - GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded.This project has...
ADVERTISEMENT No. PR-54/2013
No. of Posts and Specialization: 1(UR)
Educational Qualification:
(i) Good academic record with a Ph.D. Degree in the concerned /allied /relevant disciplines.
(ii) The Ph.D. Degree shall be a mandatory...
genomearchitect.github.io - Apollo is a plug-in for the JBrowse Genome Viewer.
In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own...
NATIONAL INSTITUTE OF TECHNOLOGY CALICUT, KERALA
NOTIFICATION FOR FACULTY RECRUITMENT – 2013
(Faculty openings in Technology, Science, Architecture and Management at NIT Calicut, Kerala)
National Institute of Technology Calicut, Kerala,...
github.com - Simulated genomes with pre-defined and random genomic variants can be very useful for benchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for simulating the full-spectrum of genomic variants (single...