Jit
Enthusiast computational biologist with business dream !!!
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PANDASEQ
By Shruti Paniwala 2839 days agoneufeldserver.uwaterloo.ca - PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If amplification primers were used (e.g., to isolate a variable...Qualimap2: Evaluating next generation sequencing alignment data
By Jit 2243 days agoqualimap.bioinfo.cipf.es - Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like...Fastq format
By Jit 2739 days agoen.wikipedia.org - FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a...DIYA: a bacterial annotation pipeline for any genomics lab
By Jit 2681 days agosourceforge.net - DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and...Sr.Bioinformatics Analyst (NGS) at Ocimum
JOB FUNCTIONBio Tech/R&D/Scientist INDUSTRYBiotechnology/Pharmaceutical/Medicine SPECIALIZATIONBasic Research,Bio-Statistician,Clinical Research QUALIFICATION Any Post Graduate BA (Arts), B.Com. (Commerce), BE/ B.Tech (Engineering),...NGS course Medical Genomics, scheduled for 17-20 September 2013 in UZ Leuven (Belgium).
By Poonam Mahapatra 4099 days agoThe 4-day course is organized as a series of morning lectures and afternoon hands-on workshops.
Bioinformatics Services / CRO Services
Last updated 1822 days ago by RASA Life SciencesRASA is set to provide premium technical and scientific services in a form of solutions, product development and training. .We are also very proficient in providing the high quality Research & Development services in life science informatics...pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2353 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2205 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...Managing and Analyzing Next-Generation Sequence Data
By Rahul Agarwal 3828 days agowww.ploscompbiol.org - Centralized Bioinformatics Core Facilities provide shared resources for the computational and IT requirements of the investigators in their department or institution. As such, they must be able to effectively react to new types of experimental...
