Jit
Enthusiast computational biologist with business dream !!!
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BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1435 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...Entrez Direct: E-utilities on the UNIX Command Line
By Anjana 2958 days agowww.ncbi.nlm.nih.gov - Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line...PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
By LEGE 277 days agogithub.com - What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plastome) assemblies, mitochondrial genome assemblies, nuclear ribosomal DNAs...IMPUTE2
By Jit 2950 days agomathgen.stats.ox.ac.uk - IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but we have also built up a collection of specialized and powerful options. If you are...Statistical for biological research
By Neel 2943 days agowww.nature.com - There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late. This collection highlights important statistical issues that...Comparative genomics educational material and papers bookmarks
By Jit 2937 days ago Comments (5)www.nature.com - Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions...PGAP-X: Extension on pan-genome analysis pipeline
By Rahul Nayak 2497 days agohttps://pgapx.ybzhao.com/ - PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials of algorithms and methodologies have been developed and integrated to analyze and visualize genomics structure variation, gene distribution with different...Research Officer at National Tea Research Foundation
National Tea Research Foundation (NTRF) a registered body, requires qualified and experienced agricultural research scientist for contractual appointment as per details below : Post Research Officer, NTRF, Kolkata Essential Post Graduate...bpRNA: large-scale automated annotation and analysis of RNA secondary structure
By Rahul Nayak 2377 days agogithub.com - bpRNA, a novel annotation tool capable of parsing RNA structures, including complex pseudoknot-containing RNAs, to yield an objective, precise, compact, unambiguous, easily-interpretable description of all loops, stems, and pseudoknots, along with...
