Jit
Enthusiast computational biologist with business dream !!!
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Data Visualization in Bioinformatics: Useful and Eye-Catching Plots for Data Analysis
By LEGE 9 days agoThe choice of visualization can significantly impact the insights gained from bioinformatics data. By selecting plots tailored to your data type and analysis goals, you can effectively communicate your findings and make your research more impactful....Protein function annotation and machine learning - UPMC - Paris, France
Protein function annotation and machine learning - UPMC - Paris, France Job Description: We are interested in finding an excellent postdoc with interests in protein functional annotation, machine learning and computer grids. The position is open...flo
By Jitendra Narayan 3239 days agogithub.com - flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality...funannotate: Eukaryotic Genome Annotation Pipeline
By Jit 2287 days agogithub.com - Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved over time to accomodate larger genomes. The impetus for this...Maq: Mapping and Assembly with Quality
By Jit 2953 days agomaq.sourceforge.net - Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by SourceForge.net. The project page is available athttp://sourceforge.net/projects/maq/....Structural variation: the hidden genomic treasure
By Jit 2935 days ago Comments (6)Structural variants (SVs) such as deletions, insertions, duplications, inversions and translocations litter genomes and are often associated with gene expression changes and severe phenotypes (ie. genetic diseases in humans).coursera genome assembly tutorial
By Jit 2585 days agogithub.com - Solutions to Coursera Genome Sequencing (Bioinformatics II)sockeye
By Jit 2866 days agowww.bcgsc.ca - This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects...MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
By Rahul Nayak 2418 days agogithub.com - MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and...Software and Tools to detect structure variation with long reads !!
By Archana Malhotra 2840 days agoStructural variation caller tools using long reads
