BOL

github.com - MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to...

github.com - NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an identified misassembly and will generate a new fasta file...

lifemap-ncbi.univ-lyon1.fr - Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning.  The...

www.nature.com - Segmental Duplication Assembler (SDA; https://github.com/mvollger/SDA) constructs graphs in which paralogous sequence variants define the nodes and long-read sequences provide attraction and repulsion edges, enabling the partition and assembly of...

School of Computational & Integrative Sciences Jawaharlal Nehru University New Delhi-110067, INDIA Date: April 24th. 2017 Last Date: May 6th 2017 PROJECT ID: 632 The following posts are urgently required to be filled for the Department...

sourceforge.net - CONTIGuator is a Python script for Linux environments whose purpose is to speed-up the bacterial genome assembly process and to obtain a first insight of the genome structure using the well-known artemis comparison tool (ACT).  

We are two groups of scientists doing frontier research in quantitative biology and biomedicine. The Bienko group is interested in exploring the fundamental design principles controlling how DNA is packed in the eukaryotic nucleus and its relation...

PhD positions in Genova at DIBRIS - Univ. of Genoa (Italy) http://www.disi.unige.it/person/MasulliF/ricerca/PhDinGenova2017.html The call for some funded positions for the 3 years PhD studies at the Department of Informatics, Bioengineering,...

NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS (An Autonomous Institution of the Government of India) P.O.: N.S.S., Kalyani 741251, West Bengal Advertisement No. 137/ESTB/NIBMG/17-18 Position available Project Description: Several positions are...

support.10xgenomics.com - Supernova generates phased, whole-genome de novo assemblies from a Chromium-prepared library. Please see Achieving Success with De Novo Assembly and System Requirements before creating your Chromium libraries for...