Jit
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mrFAST: Micro Read Fast Alignment Search Tool
By Neel 3131 days agomrfast.sourceforge.net - mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold,...segemehl
By Anjana 3117 days agohoffmann.bioinf.uni-leipzig.de - segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is...Stampy
By Abhi 3107 days agowww.well.ox.ac.uk - Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of...TGNet
By Shruti Paniwala 3011 days agogithub.com - Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of scaffolds instead of small numbers of...Sushi: An R/Bioconductor package for visualizing genomic data
By Jit 3004 days agowww.bioconductor.org - Sushi: An R/Bioconductor package for visualizing genomic dataR-chie
By Jit 3003 days agowww.e-rna.org - R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour and to also visualize corresponding multiple sequence alignments and...PHYMMBL
By Jit 2964 days agowww.cbcb.umd.edu - Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or even thousands of species. One of the main challenges in analyzing a metagenome is phylogenetic classification of raw sequence...Software and Tools to detect structure variation with long reads !!
By Archana Malhotra 2808 days agoStructural variation caller tools using long readsdeepTools
By Martin Jones 3666 days agoUser-friendly tools for the normalization and visualization of deep-sequencing data
