Poonam Mahapatra
Bioinformatics Researcher
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NCBI Magic-BLAST
By Jit 2271 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...Raghava's Group
Raghava's group is known for developing open source software or web servers. Group have developed large number of web-based services. Find more at http://www.imtech.res.in/raghava/Common steps for reads mapping !
By BioStar 604 days agoMapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis.Assistant Professor at SARDAR PATEL UNIVERSITY
SARDAR PATEL UNIVERSITY Centre for Interdisciplinary Studies in Science and Technology No.: SPU/CISST/Advt./2014-15/519 ADVERTISEMENT for Teaching Positions (Contractual) Applications for the following Contractual Teaching Position are...d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
By Jit 2402 days agochristophergandrud.github.io - Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The d3Network package makes it easy to create these network graphs from R. The main idea is that you should able to take...Bioinformatics Protocols
By Rahul Nayak 3834 days agogenome.edu.au - RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysis using a very small synthetic dataset from a well...
Tools for Protein-Protein Docking !
Last updated 2383 days ago by Poonam MahapatraPredicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, and properly dealing with molecular flexibility and conformational changes....Associate Professor - Bio-Informatics at University of Allahabad in Allahabad
No of vacancies: 01 Pay scale: Pay Band of Rs. 37400-67000 with AGP of Rs. 9000. i. Educational Qualification: Good academic record with a Ph.D. Degree in the concerned/allied/relevant disciplines. ii. A Master's Degree with at least 55%...MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
By Rahul Nayak 2367 days agogithub.com - MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and...DNA Replication Process [3D Animation]
By Rahul Nayak 3829 days agoSee an organised list of all the animations: http://doctorprodigious.wordpress.com/hd-animations/
