Jit
Enthusiast computational biologist with business dream !!!
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Quick tour of Genetic Algorithms !
By Jit 2819 days ago Comments (1)cran.r-project.org - The R package GA provides a collection of general purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools for implementing genetic algorithms search in both the continuous and discrete...GPOPSIM: a simulation tool for whole-genome genetic data
By Jit 3184 days agogithub.com - GPOPSIM is a simulation tool for pedigree, phenotypes, and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible parameter settings for a wide discipline of users, especially can...Flanker
By Rahul Nayak 2046 days agogithub.com - Flanker, a Python package which performs alignment-free clustering of gene flanking sequences in a consistent format, allowing investigation of mobile genetic elements (MGEs) without prior knowledge of their structure. Flanker can be...Shinyheatmap
By Jit 3637 days agohttp://shinyheatmap.com/ - Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in...When Thousands of Bacterial Genomes Become One Giant Map
By LEGE 40 days agoDeveloped by Jérôme Arnoux and colleagues, PANORAMA is a computational tool designed to explore bacterial pangenomes—the complete collection of genetic possibilities found across a species or group of related organisms. Instead of looking at every...Collection of Graph Visualization tools !
By Neel 1350 days agopangenome.github.io - Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences from this reference are hard to observe and describe in a coherent way. Variation...Five unique traits of effective computational biologist
By Jitendra Narayan 4835 days ago Comments (3)Traits of biological programmers
Which Perl distribution should I choose for bioinformatics study : ActivePerl, Strawberry Perl, DWIM Perl, Citrus Perl ?
Manshi Raghubanshi 4801 days ago
Clean the FASTA file
By Jit 4751 days agoMostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
