Jit
Enthusiast computational biologist with business dream !!!
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Interactive Bioinformatics Resources !
By Jit 1668 days agohttp://sandbox.bio - Learn how to use bioinformatics tools right from your browser.Everything runs in a sandbox, so you can experiment all you want. More at sandbox.bioS-plot2: creates an interactive, two-dimensional heatmap of sequences
By Jit 2717 days agobitbucket.org - S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can...dotPlotly: Generate an interactive dot plot from mummer or minimap alignments
By Rahul Nayak 2571 days agogithub.com - Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testingshinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
By Jit 2198 days agoyimingyu.shinyapps.io - shinyChromosome is a graphical user interface for interactive creation of non-circular whole genome diagrams developed using the R Shiny package. To create single-genome plot by aligning genome data along all chromosomes of a single genome, go to...
Master Thesis: Trans-membrane topology prediction through Markov based decoders
By Rahul Agarwal 4616 days agoAbstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far the development of reliable knowledge –based potentials that can be used for automatic prediction of...eQuant : energy-based quality assessment of protein
By Shruti Paniwala 3178 days agobiosciences.hs-mittweida.de - Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliability of these particular protein structures.eQuant is a service for structure...STRUM: structure-based prediction of protein stability changes upon single-point mutation
By BioStar 2735 days agozhanglab.ccmb.med.umich.edu - STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch to train the Gibbs free-energy changes on a variety of features...PhD student / Bio-informatician in computational protein modeling
PhD student / Bio-informatician in computational protein modeling Job Profile You will perform research on drug/protein interaction analysis in the context of lung cancer, using computational protein modeling. You will implement existing models...Basics of BLAST Programs !
By BioStar 589 days agoThe Basic Local Alignment Search Tool (BLAST) is a powerful bioinformatics program used to compare an input sequence (such as DNA, RNA, or protein sequences) against a database of sequences to find regions of similarity.An entire genome written in lab
By Rahul Nayak 4516 days agoResearchers rewrite an entire genome — and add a healthy twist
