Jit
Enthusiast computational biologist with business dream !!!
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JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
By Jit 2377 days agogithub.com - Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wikiSynteny Portal: a web-based application portal for synteny block analysis
By Jit 3405 days agobioinfo.konkuk.ac.kr - Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny blocks among multiple species by using prebuilt alignments in the UCSC...irishgrid: Irish Grid Mapping System
By Jit 4285 days agocode.google.com - Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10 km map IrishGrid includes: native support of the Irish Grid System (see...Postdoctoral Researcher in Cancer Systems Biology
Postdoctoral Researcher in Cancer Systems Biology Department of Oncology, Old Road Campus Research Building, Roosevelt Drive, Oxford Grade 7: £30,434 - £37,394 with a discretionary range to £40,847 p.a. Applications are invited for a Postdoctoral...Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
By Jit 3216 days agoschatzlab.cshl.edu - Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for several decades. Recently, a nanopore-based sequencing instrument, the Oxford Nanopore MinION, has become available that we used...Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
By Neel 2892 days agogithub.com - Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2...Professor of Bioinformatics
The Department of Statistics are seeking to recruit a Professor of Bioinformatics. The professorship will be held alongside a Fellowship at University College. The Department is at the forefront of developments in machine learning, data science,...Tools to detect synteny blocks regions among multiple genomes
By Jitendra Narayan 4751 days ago Comments (24)Collections of synteny detection tools and related materialsMurasaki
By Anjana 3641 days agomurasaki.dna.bio.keio.ac.jp - Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wall minutes)) scalable (Arbitrarily parallelizable across multiple...MCscan
By Bulbul 3558 days agochibba.agtec.uga.edu - MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating the synteny correspondences...
