Rahul Nayak
A Bioinformatician
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Scripts for the analysis of HGT in genome sequence data.
By Jit 2553 days agogithub.com - Scripts for the analysis of HGT in genome sequence dataGIGGLE: a search engine for large-scale integrated genome analysis
By Jit 2511 days agogithub.com - GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https://github.com/ryanlayer/giggle) scales to billions of intervals and is...bpRNA: large-scale automated annotation and analysis of RNA secondary structure
By Rahul Nayak 2378 days agogithub.com - bpRNA, a novel annotation tool capable of parsing RNA structures, including complex pseudoknot-containing RNAs, to yield an objective, precise, compact, unambiguous, easily-interpretable description of all loops, stems, and pseudoknots, along with...Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the...
By Rahul Nayak 1825 days agopypi.org - The Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees (although clustering trees or any other tree-like data structure are also...netGO: R-Shiny package for network-integrated pathway enrichment analysis
By Jit 1748 days agogithub.com - netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species...
Sample bandage input file for visual analysis
By Jit 1419 days agoSample bandage input file for visual analysis ...Breedbase is a comprehensive breeding management and analysis software
By BioStar 1419 days agohttps://breedbase.org/ - Breedbase is a comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high...kebabs: package provides functionality for kernel based analysis of biological sequences via...
By Rahul Nayak 997 days agowww.bioinf.jku.at - The kebabs package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods. Biological sequences include DNA, RNA, and amino acid (AA) sequences. Sequence kernels define...Powerful books for learning data analysis with R
By LEGE 181 days agohttps://r-graphics.org/ - R is powerful tool for data analysis, visualization, and machine learning. And it costs $0 to use! Here are six FREE books you can use to learn R...VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
By Jit 1983 days agogithub.com - find the resources we provide here useful in getting you set up to analyse and interpret your data. To reference VESPA: https://peerj.com/preprints/1895/ Documentation is now hosted on ReadTheDocs
