Jit
Enthusiast computational biologist with business dream !!!
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Dot, an interactive viewer for genome-genome comparison
By Jit 3072 days agogithub.com - Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner...dotPlotly: Generate an interactive dot plot from mummer or minimap alignments
By Rahul Nayak 2669 days agogithub.com - Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testingPASA: Gene Structure Annotation and Analysis
By biogeek 3091 days agopasapipeline.github.io - PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation...bpRNA: large-scale automated annotation and analysis of RNA secondary structure
By Rahul Nayak 2943 days agogithub.com - bpRNA, a novel annotation tool capable of parsing RNA structures, including complex pseudoknot-containing RNAs, to yield an objective, precise, compact, unambiguous, easily-interpretable description of all loops, stems, and pseudoknots, along with...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 2003 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...Recombination detection tool
By Jit 3784 days ago Comments (2)github.com - A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhotRelease Notes for Genome Workbench 2.10.5
By Jit 3684 days agoNew Features in latest release New ProSplign tool integrated with Genome WorkbenchGKNO
By Neel 3676 days agohttp://gkno.me/ - gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise...LoRMA: a tool for correcting sequencing errors in long reads such those produced by Pacific...
By Jit 3650 days agowww.cs.helsinki.fi - LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de...EasyBuild
By Jit 3424 days agohpcugent.github.io - EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.
