Jit
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Comparative genomics visualisation tools !
By Neel 1690 days agocmdcolin.github.io - Comparative genomics visualisation tools !Bioinformatic tools for pathogens informatics at CVR
By Abhi 848 days agohttps://bioinformatics.cvr.ac.uk/software/DISCOVAR
By Abhimanyu Singh 3821 days agowww.broadinstitute.org - DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping costs low. Currently it takes as input Illumina reads of length 250 or...Resolving the complexity of the human genome using single-molecule sequencing
By Rahul Agarwal 4103 days agowww.nature.com - The human genome is arguably the most complete mammalian reference assembly yet more than 160 euchromatic gaps remain and aspects of its structural variation remain poorly understood ten years after its completion. The results in this paper...EXCAVATOR: detecting copy number variants from whole-exome sequencing data
By Radha Agarkar 2830 days agosourceforge.net - EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-step normalization procedure with a novel heterogeneous hidden Markov model algorithm and a calling method that classifies...vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
By Jit 2441 days agogenome.sph.umich.edu - vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vtJASMINE: Jointly Accurate Sv Merging with Intersample Network Edges
By Shruti Paniwala 1555 days agogithub.com - This tool is used to merge structural variants (SVs) across samples. Each sample has a number of SV calls, consisting of position information (chromosome, start, end, length), type and strand information, and a number of other values. Jasmine...
