Poonam Mahapatra
Bioinformatics Researcher
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Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 2522 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
By Rahul Nayak 2390 days agogithub.com - HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BWT for...DNA Nucleotide Counter
By Neel 2233 days agowww.dnabaser.com - DNA Nucleotide Counter is delivered in a DNA Baser package together with other free molecular biology tools. Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified...Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
By BioStar 1688 days agogithub.com - Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic analyses. Tools in the dahak software suite will perform various steps in metagenomic analysis workflows including data pre-processing, metagenome assembly,...Breeding Insight
By BioStar 1416 days agowww.breedinginsight.org - Breeding Insight at Cornell University will leverage recent improvements in genomics and open source informatics components, and in partnership with small breeding programs, will enable these programs to harness powerful digital...
Short-read assembly using Spades !
Last updated 1026 days ago by Abhimanyu Singh Comments (2)If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or try it later on your own data. Get data We will use the same Illumina data as we used above: illumina_R1.fastq.gz: the Illumina...-
Mitochondrial genome assembly tools !
Last updated 444 days ago by AbhiMitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the mitochondrial genome (mitogenome) from sequencing data, typically obtained through techniques like next-generation sequencing (NGS).... Research article- Publiaction
By LALIT SAMANT 3605 days agoDear All, I am Lalit, Working as SRF In Haffkine Institute. I would like to publish research article related to protein modeling and docking which in cludes MD as final step. I am currently working on protein modeling and docking...BioGPS
By Anjana 3105 days agobiogps.org - A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
