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PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the...
By BioStar 2257 days agogithub.com - Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple...wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
By BioStar 2121 days agogithub.com - Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly...JRF in Bioinformatics @ Tezpur Universityn
Tezpur University: Napaam – 784 028: Assam Applications are invited for Walk-in-Interview for the following temporary positions in the MHRD sponsored Centre of Excellence under FAST project entitled “Machine Learning Research and Big Data...FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
By Jit 1763 days agobioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...SRF post in NEHU, Shillong
Dept of Biochemistry North-Eastern Hill University Umshing, Shillong- 793 022 Applications are invited for the post of Senior Research Fellow- SRF (one) and Junior Research Fellow- JRF (one) to be appointed in a SERB-funded major research...SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
By Jit 1746 days agogithub.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:RA Bioinformatics at Alagappa University
RA Bioinformatics Eligibility : MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech) Location : Chennai Last Date : 20 Aug 2015 Hiring Process : Walk - In Alagappa University - Job Details RA Bioinformatics Job position in Alagappa...SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 1561 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...Bioinformatics Made Easy Search: Bioinformatics tools and run genomic analysis in the cloud
By Rahul Nayak 3385 days agohttps://insidedna.me/ - InsideDNA makes hundreds of bioinformatics tools immediately available to run via an easy-to-use web interface and allows an accurate search across all functions, tools and pipelines. With InsideDNA, you can upload and store your own...AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads
By Rahul Nayak 1352 days agogithub.com - AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More...
