Jit
Enthusiast computational biologist with business dream !!!
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UnCoVar: Workflow for Transparent and Robust Virus Variant Calling, Genome Reconstruction and...
By BioStar 579 days agoikim-essen.github.io - UnCoVar: Workflow for Transparent and Robust Virus Variant Calling, Genome Reconstruction and Lineage Assignment Using state of the art tools, easily extended for other viruses Tool and database updates for critical components via...Early Genome Screening: The New Health Horoscope!
By LEGE 429 days agoAs genome screening becomes more affordable and integrated into routine healthcare, its potential to transform lives is immense. Policymakers, healthcare providers, and genetic counselors must collaborate to ensure ethical implementation, public...HiTE: a fast and accurate dynamic boundary adjustment approach for full-length Transposable...
By LEGE 169 days agogithub.com - HiTE is a Python software that uses a dynamic boundary adjustment approach to detect and annotate full-length Transposable Elements in Genome Assemblies. In comparison to other tools, HiTE demonstrates superior performance in detecting a...
RNAseq data analysis links !
Last updated 3022 days ago by Robert M WilliomsRNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data analysis, including experimental design, quality control, read alignment,...Five unique traits of effective computational biologist
By Jitendra Narayan 4622 days ago Comments (3)Traits of biological programmers
Which Perl distribution should I choose for bioinformatics study : ActivePerl, Strawberry Perl, DWIM Perl, Citrus Perl ?
Manshi Raghubanshi 4588 days ago
Clean the FASTA file
By Jit 4538 days agoMostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.-
Reverse Complement Problem Solved with Perl
Last updated 3924 days ago by JitQuestion at http://rosalind.info/problems/1b/ #Find the reverse complement of a DNA string.#Given: A DNA string Pattern.#Return: Pattern, the reverse complement of Pattern.use strict;use warnings;my $string="AAAACCCGGT";my $finalString="";my %hash... -
Clump Finding Problem Solved with Perl
Last updated 3006 days ago by JitThe question at http://rosalind.info/problems/1d/ Script are moved to http://bioinformaticsonline.com/snippets/view/34633/clump-finding-problem-solved-with-perl
