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De novo Genome Assembly for Illumina Data
By Rahul Nayak 1805 days agowww.melbournebioinformatics.org.au - Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introduction In this protocol we discuss and outline the process of de novo assembly for small to medium sized...SPADes team announce new version SPADes v3.15
By BioStar 1443 days agoNew SPAdes 3.15.0.0. announced by the SPADes teamGenome Assembly Workshop 2020
By Jit 1222 days agoucdavis-bioinformatics-training.github.io - Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...ALE: Assembly Likelihood Estimator
By BioStar 662 days agogithub.com - Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly. Depending on your genome size you may want to convert the .wig files to the BigWig format.MetaGraph: Ultra Scalable Framework for DNA Search, Alignment, Assembly
By Abhi 203 days agometagraph.ethz.ch - The MetaGraph framework is designed to work with a wide range of input data sets, indexing from a few samples up to the contents of entire archives with hundreds of thousands of records. The indexing workflow always follows the same principle,...Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
By Yeshodari 3609 days agoWebinar, next generation sequencing data analysisBioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1469 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...RNA-seq workflow: gene-level exploratory analysis and differential expression
By Jit 1176 days agomaster.bioconductor.org - Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count...
Pathway Analysis
Last updated 3733 days ago by Rahul Agarwal Comments (2)Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set...Integrative RNA and ChIP-Seq analysis of regulatory T-cells
By Strand 3435 days agoIntegrative RNA and ChIP-Seq analysis of regulatory T-cells
