Neel
Bioinformatics Beginner
Our Sponsors
Related items
Tetra-Nucleotide Analysis
By Jit 2791 days agochunlab.wordpress.com - A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though...SocBiN Bioinformatics 2014
14th annual conference in Bioinformatics Date : June 10-13 Organizers: The Society for Bioinformatics in Northern European countries (SocBiN) and the Norwegian Bioinformatics Platform / ELIXIR.NO Venue: Department of Informatics,...GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
By Abhi 1092 days agogithub.com - A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from...PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
By BioStar 1594 days agogithub.com - PyParanoid is a pipeline for rapid identification of homologous gene families in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends...Bioinformatics approach to Boar Taint
By Rahul Agarwal 4178 days ago Comments (3)Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skatole in the fat primarily cause boar taint. Metabolism of androstenone and...A-allele of SLC24A5 gene is found to be responsible for variation in skin color of South-East...
By Rahul Agarwal 4059 days agoMore is the A -allele, More is fairer the Skin !!SNPGenie
By Jit 2826 days agogithub.com - SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SNP reports (acceptable in a variety of formats) much each correspond to a...Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
By Jit 1792 days agogithub.com - Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental phase, compiles and runs with OpenMPI-1.8.8 with Intel Compiler only Cycles enumeration (aka Bubbles) as part of de novo de bruijn...vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
By Jit 1792 days agogenome.sph.umich.edu - vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vtThe new corona variant has 23 mutations in all, which is unusually huge !
By Shruti Paniwala 1462 days agoThe new SARS-CoV-2 version, B.1.1.7, which was first seen in the third week of September in Kent and Greater London, has since spread to other locations in the UK.
