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parallelLastz: Lastz with multi-threads support.
By BioStar 2113 days agogithub.com - Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for single computer with multiple core processors. When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly,...AlfaPang: alignment free algorithm for pangenome graph construction
By BioStar 281 days agogithub.com - AlfaPang constructs variation graphs, leveraging its alignment-free and reference-free approach, based solely on intrinsic sequence properties. This design allows AlfaPang's runtime and memory usage to scale linearly with the size of input...List of popular bioinformatics software/tools
By Jitendra Narayan 4707 days ago Comments (28)samtools.sourceforge.net - In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.
A guide for complete R beginners :- Installing R packages
Last updated 4119 days ago by Archana MalhotraPart of the reason R has become so popular is the vast array of packages available at the cran and bioconductor repositories. In the last few years, the number of packages has grown exponentially! This is a short post giving steps on how to...-
Installing python-numpy !
Last updated 2951 days ago by Jit$ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-notebook python-pandas python-sympy python-nose[sudo] password for urbe: Reading package lists... DoneBuilding dependency tree Reading state information... DoneThe... 
Linux Cheat Sheet
By Jitendra Narayan 4714 days ago Comments (2)In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.-
Linux SSH Client Commands for Bioinformatics
Last updated 4467 days ago by Rahul NayakHere come on let play with the following basic command line usage of the ssh client.1. Check your SSH Client Version:Checking for your SSH client is very sare, but sometimes it may be necessary to identify the SSH client that you are currently... -
Find certain files/documents in Linux OS
Last updated 4443 days ago by Rahul NayakAs bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of files and folders. In order to search the missing file a strong search command is required. The Linux Find Command is one of the most... -
Search Shell Command History
Last updated 4376 days ago by Rahul NayakWe use couple of hundreads of command in daily basis. Most of them are actually repeated several time. The question remain open how do I search old command history under bash shell and modify or reuse it? Now a days almost all modern shell allows... -
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
Last updated 3042 days ago by Rahul NayakThe purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. File System ls — list items in current directory ls...
