Rahul Nayak
A Bioinformatician
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COSMOS, our workflow management system for NGS data
By Jit 3777 days agocosmos.hms.harvard.edu - COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinformatics (Gafni et al....ArrayGen Bioinformatics Genomics Group
Category: researchlabs:Bioinformatics
PI: ArrayGen Technologies
By ArrayGen Technologies 3710 days agoArrayGen is a global bioinformatics company which is a one stop solution for microarray designing and genomics data analysis. Our novel Array Design Approach Strategy (ADAS) aims to condense the time lag between demands of scientific community and...A powerful, yet simple, gene set analysis tool for interpreting RNA-seq and NGS results.
By Shani 3678 days agoLifeMap Sciences is introducing GeneAnalytics, our new gene set analysis tool, which is applicable for NGS results and differentially expressed gene lists from variable sources. GeneAnalytics provides gene associations with tissues &...Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
By Yeshodari 3574 days agoWebinar, next generation sequencing data analysisScaffolding of a bacterial genome using MinION nanopore sequencing
By Rahul Agarwal 3428 days agowww.nature.com - Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs cannot...Bioinformatics WalkIn at NII
ADVERTISEMENT OF WALK-IN-INTERVIEW NAME OF THE POST : Bioinformatician (Part time 3 days in a week) (One Position only) DURATION : One Year NAME OF THE PROJECT : Next generation sequencing facility EDUCATIONAL QUALIFICATIONS : At least a...Stacks
By Jitendra Narayan 3196 days agocatchenlab.life.illinois.edu - Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps...SCALCE
By Surabhi Chaudhary 3145 days agosfu-compbio.github.io - SCALCE (/skeɪlz/, a.k.a. boosting Sequence Compression Algorithms using Locally ConsistentEncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumina-generated FASTQ files, but supports any...mrFAST: Micro Read Fast Alignment Search Tool
By Neel 3134 days agomrfast.sourceforge.net - mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold,...cutadapt
By Radha Agarkar 3117 days agocutadapt.readthedocs.io - Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cleaning your data in this way is often required: Reads from small-RNA sequencing contain the...
