Neel
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Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
By Jit 2400 days agogithub.com - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo:...Tools for Sequence translation !
By Abhi 1428 days ago Comments (1)A core element in the downstream analysis for RNA-seq data involves the translation of assembled sequences into their corresponding amino acid sequences, and on the nucleotide level into the protein coding sequences (CDS) not containing any...Chemical Elements of Bioinformatics
By Rahul Agarwal 4781 days agoAmaze by new elements table by Eagle genomics !!!Mulan: MUltiple sequence Local AligNment and conservation visualization tool
By Rahul Nayak 3365 days agomulan.dcode.org - Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It...PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
By Jit 3231 days agohttps://plast.inria.fr/ - PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture,...SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
By Jit 2947 days agowww.bioinformatics.babraham.ac.uk - SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic...iRNAD: a computational tool for identifying D modification sites in RNA sequence
By Abhimanyu Singh 2700 days agolin-group.cn - iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the...Apollo: a sequence annotation editor
By Abhimanyu Singh 2597 days agogenomebiology.biomedcentral.com - The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biological experts to refine these approximations by viewing and independently evaluating the data supporting...Complete genome sequence of Wuhan seafood market pneumonia virus is out !
By Jit 2440 days ago Comments (1)On Jan 10 2020, while news of the first fatality was barely trickling in, the 29,903 letters constituting the viral genome from an affected individual in Wuhan had already been elucidated (even though a few corrections were made subsequently).China’s BGI says it can sequence a genome for just $100
By Neel 2411 days ago Comments (6)China’s BGI says it can sequence a genome for just $100
