Jit
Enthusiast computational biologist with business dream !!!
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Modular, efficient and constant-memory single-cell RNA-seq preprocessing
By Jit 1950 days ago Comments (1)pachterlab.github.io - With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies such as...proActiv: Estimation of Promoter Activity from RNA-Seq data
By BioStar 2185 days agogithub.com - proActiv is an R package that estimates promoter activity from RNA-Seq data. proActiv uses aligned reads and genome annotations as input, and provides absolute and relative promoter activity as output. The package can be used to identify active...BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 2055 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...Kallisto vs Salmon: Choosing the Right Tool for RNA-Seq Quantification
By BioStar 462 days agoIn the world of transcriptomics, quantifying gene and transcript expression accurately and efficiently is crucial. With the explosion of RNA-Seq data, researchers have turned to fast, alignment-free tools that streamline the quantification process...LncPipe:A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq...
By LEGE 1785 days agogithub.com - The pipeline was developed based on a popular workflow framework Nextflow, composed of four core procedures including reads alignment, assembly, identification and quantification. It contains various unique features such as well-designed...Rosalind Bioinformatics problems !!!
By Abhi 4250 days agorosalind.info - Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
By Yeshodari 3210 days agoStrand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017RNA-Seq Analysis: A Guide for Bioinformaticians
By LEGE 607 days agoRNA-Seq analysis is a cornerstone of modern transcriptomics, offering bioinformaticians a versatile toolkit for unraveling gene expression and regulation. Mastering RNA-Seq workflows and tools empowers researchers to transform raw sequencing data...dupRadar package
By Jit 3105 days agobioconductor.org - The dupRadar package gives an insight into the duplication problem by graphically relating the gene expression level and the duplication rate present on it. Thus, failed experiments can be easily identified at a glance
