Jit
Enthusiast computational biologist with business dream !!!
Our Sponsors
Related items
CrossMap: program for genome coordinates conversion between different assemblies
By Rahul Nayak 1169 days ago Comments (1)crossmap.sourceforge.net - CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats...RNA-Seq Data Pathway and Gene-set Analysis Workflows
By Jit 4183 days agoDescribe the GAGE workflows on RNA-Seq data pathway analysis and gene-set analysis.Scallop: reference-based transcriptome assembler for RNA-seq
By Rahul Nayak 2527 days agogithub.com - Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be...Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
By BioStar 1889 days agogithub.com - Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run...New RNA Seq tool
By Rahul Agarwal 4001 days ago Comments (4)www.genengnews.com - "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool...A 3D Map of the Human Genome
By Jitendra Narayan 3769 days agoSuhas Rao and Miriam Huntley (of the Aiden Lab) describe a 3D map of the human genome at kilobase resolution, revealing the principles of chromatin looping. Guest Origami Folding: Sarah Nyquist. Suhas S.P. Rao*, Miriam H. Huntley*, Neva C. Durand,...Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
By Yeshodari 2724 days agowww.strand-ngs.com - Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswire/ Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular Identifiers (UMIs) for DNA-, RNA-, and...RNA-Seq differential expression work flow using DESeq2
By BioStar 1324 days agowww.sthda.com - One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.GeneSpring webinar- Uncovering mechanisms of hepatotoxicity on 14 June at 8AM PST
By Yeshodari 2877 days agoUncovering Mechanisms of Hepatotoxicity for High Affinity Antisense Oligonucleotides – 3’ end RNA-seq Profiling Using GeneSpring GX High affinity antisense oligonucleotides (ASOs) containing bicylic modifications (BNA) such as locked...The El-Sherif Group, Chair of Developmental Biology, Department of Biology - PhD Position
El-Sherif lab studies how genes are regulated to mediate patterning in Development. We use live and super-resolution imaging in addition to computational modeling to understand transcription dynamics at the single-cell level in three model systems:...
