Jit
Enthusiast computational biologist with business dream !!!
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postdoctoral fellow for a large-scale microbial comparative genomics !
Asaf Levy hiring a postdoctoral fellow for a large-scale microbial comparative genomics project at the Hebrew University of Jerusalem (Israel). The project is a continuation of Levy Asaf et al. Nature Genetics 2018 paper. Requirements:...LoVis4u: Locus Visualisation tool for comparative genomics
By LEGE 97 days agogithub.com - Description LoVis4u is a bioinformatics tool for Loci Visualisation. LoVis4u, a command-line tool and Python API designed for highly customizable and fast visualisation of multiple genomic loci. LoVis4u generates vector images in...Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
By Shruti Paniwala 2250 days agowww.well.ox.ac.uk - Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect...Classification of SARS-CoV2 Variant !
By Jit 1122 days agoThe scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage:AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
By BioStar 2558 days agosourceforge.net - AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to...vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
By Jit 1791 days agogenome.sph.umich.edu - vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vtThe new corona variant has 23 mutations in all, which is unusually huge !
By Shruti Paniwala 1461 days agoThe new SARS-CoV-2 version, B.1.1.7, which was first seen in the third week of September in Kent and Greater London, has since spread to other locations in the UK.Two postdoc positions to study multiscale genome evolution and cephalopod gene regulation...
Vienna Biocenter are seeking two postdoctoral researchers to join our team and work on the ERC funded project "METASCALE: Modes of genome evolution during major metazoan transitions". The task of both positions will be to study co-evolutionary...CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
By Rahul Nayak 2551 days agohttps://cblab.org/camsa/ - CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license. Main features: works with any number of...Comparative Genomics Data Set Including 240 Mammals Released !
By Jit 1494 days agoThe genome of 130 mammals was sequenced by a large international consortium and the data was analyzed together with 110 existing genomes to allow scientists to identify the important positions in the DNA.
