Jit
Enthusiast computational biologist with business dream !!!
Our Sponsors
Related items
Tools for Searching Repeats And Palindromic Sequences
Last updated 2883 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later...Predict Gene Ontology with sequences !
By LEGE 2069 days agoekhidna2.biocenter.helsinki.fi - PANNZER (Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the functional description (DE) and GO...S-plot2: creates an interactive, two-dimensional heatmap of sequences
By Jit 2718 days agobitbucket.org - S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can...SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
By Jit 2643 days agolbbe.univ-lyon1.fr - The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints. SiLiX adopts a graph-theoretical framework to...Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
By Poonam Mahapatra 2385 days agowww.littlest.co.uk - Miropeats discovers regions of sequence similarity amongst any set of DNA sequences and then presents this similarity information graphically. Sequence similarity searching is a very general tool that forms the basis of many different biological...NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
By Jit 2133 days agogithub.com - NucDiff locates and categorizes differences between two closely related nucleotide sequences. It is able to deal with very fragmented genomes, structural rearrangements and various local differences. These features make NucDiff to be perfectly...Common methods to discover tandem repeats
By BioStar 1095 days agoTandem repeats are DNA sequences that are repeated in a contiguous manner in the genome.SVbyEye: R Package to visualize alignments between two or multiple DNA sequences
By LEGE 537 days agogithub.com - R Package to visualize alignments between two or multiple DNA sequences includinga number of functionalities to facilitate processing of alignments in PAF format. SVbyEye, an open-source R package to visualize and annotate sequence-to-sequence...dcGOR
By Martin Jones 4138 days agoan R package for analysing ontologies and protein domain annotationsRASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
By Abhi 3602 days agohttp://rast.nmpdr.org/ - The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes...
