Jit
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Understanding BLASTn output format 6 !
Last updated 2370 days ago by Rahul NayakBLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabular output format 6 Column headers:qseqid sseqid pident...Visualise blast results !
By Abhi 804 days agokablammo.wasmuthlab.org - Kablammo helps you create interactive visualizations of BLAST results from your web browser. Find your most interesting alignments, list detailed parameters for each, and export a publication-ready vector image, all without installing any...KOALA: KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH...
By Abhimanyu Singh 2203 days agowww.kegg.jp - KOALA (KEGG Orthology And Links Annotation) is KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH computation. BlastKOALA and GhostKOALA assign K numbers to the user's sequence data...DarkHorse: a method for genome-wide prediction of horizontal gene transfer
By Jit 2741 days agowww.ncbi.nlm.nih.gov - A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or...swgis v2.0 : a seqword genomic island sniffer
By Abhimanyu Singh 2244 days agoeugi.bi.up.ac.za - swgis v2.0 is the modified version of the seqword genomic island sniffer. this version is specifically optimized for predicting genomic islands in eukaryotic genomes. swgis v2.0 was tested on several eukaryotic species of different lineages....Postdoc position at Kiel University, Germany
In the Genomic Microbiology Group of Prof. Tal Dagan at the Institute of Microbiology at Kiel University, Germany, a Postdoc position (m/w/d) in the field of computational evolutionary microbiology is available for an initially limited...How to install Perl modules manually, using CPAN command, and other quick ways
By Jit 4182 days ago Comments (9)Perl Module InstallationPerl Maven tutorial by Gabor Szabo
By Jitendra Narayan 4154 days agoPerl tutorial for beginners and expertsCava Deployment Tools
By Jitendra Narayan 4149 days agowww.cavapackager.com - Cava Packager allows packaging of applications written in Perl. Packaged applications can be distributed without the need for an installation of Perl on the target machine. Cava Packager is currently distributed under a free to use...
Clean the FASTA file
By Jit 4099 days agoMostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
