Raghava's group is known for developing open source software or web servers. Group have developed large number of web-based services.
Find more at http://www.imtech.res.in/raghava/
dash.plot.ly - Dash is a web application framework that provides pure Python abstraction around HTML, CSS, and JavaScript.
Dash Bio is a suite of bioinformatics components that make it simpler to analyze and visualize bioinformatics data and interact with them in...
SARDAR PATEL UNIVERSITY
Centre for Interdisciplinary Studies in Science and Technology
No.: SPU/CISST/Advt./2014-15/519
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github.com - Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
https://github.com/tanghaibao/jcvi
More at https://github.com/tanghaibao/jcvi/wiki
genome.edu.au - RNA Seq
Basic Galaxy Tutorial
RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols
In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysis using a very small synthetic dataset from a well...
Subprocess is one of simplest way of running linux command from within python code
Example:
if you want to run fastqc for QC of fastq file:
from subprocess import Popen,PIPE,call
p=Popen(["fastqc","-f","fastq","-o",...
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sourceforge.net - CONTIGuator is a Python script for Linux environments whose purpose is to speed-up the bacterial genome assembly process and to obtain a first insight of the genome structure using the well-known artemis comparison tool (ACT).
University of Sheffield geneticist and bioinformatics expert Dr Eran Elhaik demonstrates the power of his new DNA research, which allows people to discover their genetic homeland from 1000 years ago. Find out more about our biological research here...
github.com - MitoHiFi v3.2 is a python pipeline distributed under MIT License !
MitoHiFi was first developed to assemble the mitogenomes for a wide range of species in the Darwin Tree of Life Project...