Jit
Enthusiast computational biologist with business dream !!!
Our Sponsors
Related items
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
By Jit 2581 days agohttps://plast.inria.fr/ - PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture,...AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2332 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...AMStat: display statistics of large sequence files from next generation sequencing projects
By Neel 2238 days agosamstat.sourceforge.net - SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statistics are reported for unmapped, poorly and accurately mapped reads...Introduction to Bioinformatics
By eliabrodsky 2030 days agoLearn about bioinformatics online by watching videos, reading engaging articles and practicing bioinformatics skills using public domain datasets.
Bioinformatics Services / CRO Services
Last updated 1876 days ago by RASA Life SciencesRASA is set to provide premium technical and scientific services in a form of solutions, product development and training. .We are also very proficient in providing the high quality Research & Development services in life science informatics...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1772 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...FiNGS: Filters for Next Generation Sequencing
By Neel 1397 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
By Rahul Nayak 2274 days agogithub.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...Kevler: Reference-free variant discovery in large eukaryotic genomes
By Jit 1793 days agogithub.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...
