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SViper: Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact...
By Neel 2270 days agogithub.com - Call sviper ~$ ./sviper -s short-reads.bam -l long-reads.bam -r ref.fa -c variants.vcf -o polished_variants This will output a polished_variants.vcf file, that contains all the refined variants. Sometimes it is helpful to look at the...Software and Tools to detect structure variation with long reads !!
By Archana Malhotra 3281 days agoStructural variation caller tools using long readsCoLoRMap: Correcting Long Reads by Mapping short reads
By Jit 2758 days agogithub.com - Second generation sequencing technologies paved the way to an exceptional increase in the number of sequenced genomes, both prokaryotic and eukaryotic. However, short reads are difficult to assemble and often lead to highly fragmented assemblies....HASLR: a hybrid assembler which uses both second and third generation sequencing reads
By BioStar 2136 days agogithub.com - HASLR, a hybrid assembler which uses both second and third generation sequencing reads to efficiently generate accurate genome assemblies. Our experiments show that HASLR is not only the fastest assembler but also the one with the lowest number of...
