Rahul Nayak
A Bioinformatician
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Modern Statistics with R
By LEGE 775 days agowww.modernstatisticswithr.com - This is the online version of the second edition of Modern Statistics with R. It is free to use, and always will be. Printed copies are available from CRC Press. Live online courses on statistics with R based on this book,...
Structural variants PPT
By Jit 3681 days ago1000 Genomes data tutorial at ASHG Structural variants presentation by Jan Korbel European Molecular Biology Laboratory (EMBL) Heidelberg Genome Biology Research...GMOL: An Interactive Tool for 3D Genome Structure Visualization
By Jit 3121 days agowww.nature.com - GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 2118 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...REGEN: Ancestral Genome Reconstruction for Bacteria
By Rahul Nayak 3136 days agowww.mdpi.com - REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the...SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
By Jit 2855 days agolbbe.univ-lyon1.fr - The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints. SiLiX adopts a graph-theoretical framework to...HiBC: Human Intestinal Bacteria Collection
By BioStar 517 days agoThe human gut is home to trillions of microorganisms, forming one of the most complex and dynamic microbial ecosystems known to science. The Human Intestinal Bacteria Collection (HiBC) is a pioneering initiative aimed at cataloging, preserving,...CLARK: Fast, accurate and versatile sequence classification system
By Jit 2425 days agoclark.cs.ucr.edu - CLARK, a method based on a supervised sequence classification using discriminative k-mers. Considering two distinct specific classification problems (see the article for details), namely (1) the taxonomic classification of metagenomic reads to...Webinar: Wednesday 21 August 2013 at Noon EDT
By Jitendra Narayan 4804 days agoSelective Sequencing Through Combinatorial Pooling
