Neel
Bioinformatics Beginner
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Finding a mimicry game for teaching on-line and mentioned general resources
By Shruti Paniwala 880 days agofinding a mimicry game for teaching on-line and mentioned general resourcesVvek's Lab
Broad Area of Research: RNA biology (microRNA, lncRNA), Stem cells, Functional genomics, Epigenomics and Cancer RNAs, especially non-coding RNAs (such as microRNA, long ncRNAs) are recently identified to be very abundant in mammalian organisms...Chekulaevalab
Focusing on understanding the molecular mechanisms that regulate mRNA translation, localization and stability and role of non-coding RNAs in this process. Up to 90% of human DNA is estimated to be transcribed into so called non-coding RNAs that are...iRNAD: a computational tool for identifying D modification sites in RNA sequence
By Abhimanyu Singh 2019 days agolin-group.cn - iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the...SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
By BioStar 1564 days agogithub.com - SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcription Start Site (TSS) identification and quantification using only RNA-seq data. It assembles novel TSSs based only on RNA-Seq data and merges them...
Tools for Searching Repeats And Palindromic Sequences
Last updated 2414 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later...GenBank release 257.0 is now available!
By Neel 459 days agoGenBank release 257.0 is now available! This release has 25.10 trillion bases and 3.69 billion records.S-plot2: creates an interactive, two-dimensional heatmap of sequences
By Jit 2249 days agobitbucket.org - S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can...UPhO: Scripts for homology and orthology assessment from genomic sequences.
By BioStar 2141 days agogithub.com - UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies. Type UPhO.py -h for help. The only input requierement for UPhO...IgBLAST 1.17 is now available with improved identification of productive V gene sequences
By Jit 1484 days agoIgBLAST 1.17 is now available with improved identification of productive V gene sequences
