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GAEMR
By Jit 3085 days agowww.broadinstitute.org - The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete...SWALO
By Jit 2916 days agoatifrahman.github.io - SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at...Cutadapt
By Bulbul 2902 days agocutadapt.readthedocs.io - Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cutadapt helps with these trimming tasks by finding the adapter or primer sequences in an...A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
By Abhimanyu Singh 2753 days agowww.sanger.ac.uk - PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate contigs from a de novo assembly against a closely related reference. IMAGE, an...HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
By Jit 2482 days agogithub.com - Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.full An ipython notebook to...EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
By Rahul Nayak 2392 days agoarthropods.eugenes.org - EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University,...SPADes team announce new version SPADes v3.15
By BioStar 1409 days agoNew SPAdes 3.15.0.0. announced by the SPADes teamgeck: trio-based comparative benchmarking of variant calls
By Jit 2015 days agogithub.com - Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim trio and the two independent Platinum Genome trios. We show that our method...Coronavirus COVID ‐19 Testing Sites In India
By Neel 1714 days agoStay at home if you have coronavirus symptomsCovid Spectrum !
By Abhi 791 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced search
