Neel
Bioinformatics Beginner
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Flu Attack! How A Virus Invades Your Body
By Jitendra Narayan 4580 days agoWhen you get the flu, viruses turn your cells into tiny factories that help spread the disease. In this animation, NPR's Robert Krulwich and medical animator David Bolinsky explain how a flu virus can trick a single cell into making a million more...Ebola virus disease (EVD)or Ebola haemorrhagic fever !!!
By Rahul Nayak 4227 days agoEbola virus disease (EVD)or Ebola haemorrhagic fever is a severe and often deadly illness in humans, caused by the Ebola virus. The disease has high mortality rate, killing upto 90% of people who are infected.MPXV Bookmarks
By BioStar 1174 days agowww.cdc.gov - MPVX infection across the globe https://www.cdc.gov/poxvirus/monkeypox/response/2022/world-map.htmlSequencing Solutions to World Health
By Rahul Agarwal 4573 days agowww.lifetechnologies.com - "New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologiesFrequently used bioinformatics tools for viral genome analysis !
By Neel 1718 days agoFrequently used bioinformatics tools for viral genome analysis !Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
By Jit 1320 days agowww.ncbi.nlm.nih.gov - LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus...Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
By Rahul Nayak 3036 days agogithub.com - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good...MinION_GC: An R script to do some QC on MinION data
By Radha Agarkar 3016 days agogithub.com - Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out...MIX: Combining multiple assemblies from NGS data
By Rahul Nayak 2860 days agogithub.com - Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices...NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
By Jit 2770 days agogithub.com - NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different...
