Jit
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SIMBA: a Genome Assembly Project Management System
By Neel 2808 days agoufmg-simba.sourceforge.net - SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS)...SPADes team announce new version SPADes v3.15
By BioStar 2030 days agoNew SPAdes 3.15.0.0. announced by the SPADes teamGenome Assembly Workshop 2020
By Jit 1808 days agoucdavis-bioinformatics-training.github.io - Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...NCBI Datasets pages
By BioStar 1122 days agoAssembly and Genome record pages now redirect to new NCBI Datasets pages.Step-by-Step Guide to Running Genome Assembly
By Abhi 602 days agoGenome assembly is a powerful process that transforms raw sequencing data into a coherent representation of an organism’s genome. By following this step-by-step guide, you can successfully assemble genomes and uncover valuable biological insights....kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
By Rahul Nayak 2992 days agogithub.com - The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any...BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2849 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Rahul Nayak 2589 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...LIBSVM -- A Library for Support Vector Machines
By Neel 3292 days agowww.csie.ntu.edu.tw - LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. Since version 2.8, it...Bokeh: An interactive visualization library that targets modern web browsers for presentation
By Jit 2919 days agobokeh.pydata.org - Bokeh is an interactive visualization library that targets modern web browsers for presentation. Its goal is to provide elegant, concise construction of versatile graphics, and to extend this capability with high-performance interactivity over very...
