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BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
By Jit 2842 days agowww.zhanyuwang.xin - BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembly based on the genome of a close species; (2) or improve the...Breaking chromosomes to study cancer !!!
By Jit 4401 days agoUsing RNA-Guided Endonuclease (RGEN) technology or CRISPR/Cas9 genome engineering technology, CNIO and CNIC researchers have shown that it is possible to obtain such chromosomal translocations.SIMBA: a Genome Assembly Project Management System
By Neel 2806 days agoufmg-simba.sourceforge.net - SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS)...RA at IISER Kolkata Computational Biology/Bioinformatics
Applications are invited from suitable candidates for research associate (post-doc; Rs. 22000-32000)/research fellow (16000-18000)/project assistant (Rs. 10000-14000) positions in the Department of Biological Sciences, Indian Institute for Science...gVolante: Completeness Assessment of Genome/Transcriptome Sequences
By Neel 2761 days agogvolante.riken.jp - A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly...The Genome 10K Project
By Jit 4390 days agohttps://genome10k.soe.ucsc.edu The Genome 10K project aims to assemble a genomic zoo—a collection of DNA sequences representing the genomes of 10,000 vertebrate species, approximately one for every vertebrate genus. The trajectory of cost reduction...Caulobacter ethensis - 2.0 : Computer-generated Genome of a Living Organism
By Abhimanyu Singh 2681 days agoAll the genome sequences of organisms known throughout the world are stored in a database belonging to the National Center for Biotechnology Information in the United States. As of today, the database has an additional entry: Caulobacter...Studentship and Traineeship in Bioinformatics at Barkatullah University, Bhopal
Department of Biotechnology & Bioinformatics Center Barkatullah University, Bhopal – 462 026 Studentship and Traineeship in Bioinformatics Applications are invited on plain paper from suitable candidates for Studentship and Traineeship...RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
By Jit 2475 days agogithub.com - Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference-guided scaffolding of draft genomes. bioRxiv 2019. RaGOO is a tool for coalescing genome assembly contigs into...U-Plot: Genome U-Plot sample implementation
By Rahul Nayak 2347 days agogithub.com - The Genome U-Plot is a JavaScript tool to visualize Chromosomal abnormalities in the Human Genome using a U-shape layout.
