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auN: a new metric to measure assembly contiguity
By Jit 876 days agolh3.github.io - Given a de novo assembly, we often measure the “average” contig length by N50. N50 is neither the real average nor median. It is the length of the contig such that this and longer contigs cover at least 50% of the assembly. A...Spines
By Jit 2949 days agowww.broadinstitute.org - Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation...bipype
By Jit 2946 days agoreadthedocs.org - Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data. If amplicons are input data, then bipype does...fqtools
By Jit 2939 days agogithub.com - fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are supported. See below for a full list of the subcommands available and a brief description of their purpose. Most of the individual...16th Congress of the European Society for Evolutionary Biology (ESEB)
Abstract submissions for our upcoming symposium on the Genomics of Adaptation that will take place as part of the 16th Congress of the European Society for Evolutionary Biology (ESEB). The conference will take place from August 20th - August 25th,...
Source Code and Pseudo Code !!
Last updated 2893 days ago by JitAn algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely the sequence of steps taken to solve a problem. The steps are normally...11th International Joint Conference on Biomedical Engineering Systems and Technologies
BIOSTEC, the 11th International Joint Conference on Biomedical Engineering Systems and Technologies. Registration to BIOINFORMATICS allows free access to all other BIOSTEC conferences. Upcoming Deadlines Regular Paper Submission: July 31,...Ideoplot
By Shruti Paniwala 2872 days agogithub.com - Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i A bed file of reference...Laj: viewing and manipulating the output from pairwise alignment programs
By Abhimanyu Singh 2856 days agowww.bx.psu.edu - Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and...
